| document-classification-on-hoc | BioLinkBERT (large) | #1 | F1: 88.1Micro F1: 84.87 |
| named-entity-recognition-ner-on-bc5cdr | BioLinkBERT (large) | #5 | F1: 90.22 |
| named-entity-recognition-ner-on-jnlpba | BioLinkBERT (large) | #6 | F1: 80.06 |
| named-entity-recognition-ner-on-ncbi-disease | BioLinkBERT (large) | #9 | F1: 88.76 |
| named-entity-recognition-on-bc2gm | BioLinkBERT (large) | #8 | F1: 85.18 |
| named-entity-recognition-on-bc5cdr-chemical | BioLinkBERT (large) | #9 | F1: 94.04 |
| named-entity-recognition-on-bc5cdr-disease | BioLinkBERT (large) | #5 | F1: 86.39 |
| pico-on-ebm-pico | BioLinkBERT (large) | #1 | Macro F1 word level: 74.19 |
| pico-on-ebm-pico | BioLinkBERT (base) | #2 | Macro F1 word level: 73.97 |
| question-answering-on-bioasq | BioLinkBERT (large) | #1 | Accuracy: 94.8 |
| question-answering-on-bioasq | BioLinkBERT (base) | #3 | Accuracy: 91.4 |
| question-answering-on-blurb | BioLinkBERT (large) | #1 | Accuracy: 83.5 |
| question-answering-on-blurb | BioLinkBERT (base) | #2 | Accuracy: 80.81 |
| question-answering-on-medqa-usmle | BioLinkBERT (base) | #17 | Accuracy: 40.0 |
| question-answering-on-newsqa | LinkBERT (large) | #13 | F1: 72.6 |
| question-answering-on-pubmedqa | BioLinkBERT (large) | #17 | Accuracy: 72.2 |
| question-answering-on-pubmedqa | BioLinkBERT (base) | #18 | Accuracy: 70.2 |
| question-answering-on-squad11 | LinkBERT (large) | #5 | EM: 87.45F1: 92.7 |
| question-answering-on-triviaqa | LinkBERT (large) | #32 | F1: 78.2 |
| relation-extraction-on-chemprot | BioLinkBERT (large) | #3 | F1: 79.98Micro F1: 79.98 |
| relation-extraction-on-ddi | BioLinkBERT (large) | #2 | F1: 83.35Micro F1: 83.35 |
| relation-extraction-on-gad | BioLinkBERT (large) | #2 | F1: 84.90Micro F1: 84.90 |
| semantic-similarity-on-biosses | BioLinkBERT (large) | #1 | Pearson Correlation: 0.9363 |
| semantic-similarity-on-biosses | BioLinkBERT (base) | #2 | Pearson Correlation: 0.9325 |
| text-classification-on-blurb | BioLinkBERT (large) | #1 | F1: 84.88 |
| text-classification-on-blurb | BioLinkBERT (base) | #2 | F1: 84.35 |