N-Gram Graph: Simple Unsupervised Representation for Graphs, with Applications to Molecules

Benchmark Model Rank Results
molecular-property-prediction-onN-GramRF#9RMSE: 0.812
molecular-property-prediction-onN-GramXGB#12RMSE: 2.072
molecular-property-prediction-on-bace-1N-GramXGB#12ROC-AUC: 79.1
molecular-property-prediction-on-bace-1N-GramRF#13ROC-AUC: 77.9
molecular-property-prediction-on-bbbp-1N-GramRF#19ROC-AUC: 69.7
molecular-property-prediction-on-bbbp-1N-GramXGB#21ROC-AUC: 69.1
molecular-property-prediction-on-clintox-1N-GramXGB#7ROC-AUC: 87.5
molecular-property-prediction-on-clintox-1N-GramRF#13ROC-AUC: 77.5
molecular-property-prediction-on-freesolvN-GramRF#19RMSE: 2.688
molecular-property-prediction-on-freesolvN-GramXGB#21RMSE: 5.061
molecular-property-prediction-on-qm7N-GramXGB#2MAE: 81.9
molecular-property-prediction-on-qm7N-GramRF#4MAE: 92.8
molecular-property-prediction-on-qm8N-GramXGB#4MAE: 0.0215
molecular-property-prediction-on-qm8N-GramRF#7MAE: 0.0236
molecular-property-prediction-on-qm9N-GramXGB#4MAE: 0.00964
molecular-property-prediction-on-qm9N-GramRF#7MAE: 0.01037
molecular-property-prediction-on-sider-1N-GramRF#4ROC-AUC: 66.8
molecular-property-prediction-on-sider-1N-GramXGB#6ROC-AUC: 65.5
molecular-property-prediction-on-tox21-1N-GramXGB#10ROC-AUC: 75.8
molecular-property-prediction-on-tox21-1N-GramRF#11ROC-AUC: 74.3