Knowledge-Design: Pushing the Limit of Protein Design via Knowledge Refinement

Benchmark Model Rank Results
protein-design-on-cath-4-2Knowledge-Design#1Perplexity: 3.46Sequence Recovery %(All): 60.77
protein-design-on-cath-4-2PiFold#2Perplexity: 4.55Sequence Recovery %(All): 51.66
protein-design-on-cath-4-2ProteinMPNN#3Perplexity: 4.61Sequence Recovery %(All): 45.96
protein-design-on-cath-4-2GVP#4Perplexity: 5.36Sequence Recovery %(All): 39.47
protein-design-on-cath-4-2GCA#5Perplexity: 6.05Sequence Recovery %(All): 37.64
protein-design-on-cath-4-2AlphaDesign#6Perplexity: 6.3Sequence Recovery %(All): 41.31
protein-design-on-cath-4-2StructGNN#7Perplexity: 6.4Sequence Recovery %(All): 35.91
protein-design-on-cath-4-2GraphTrans#8Perplexity: 6.63Sequence Recovery %(All): 35.82