OpenCodePapers

graph-classification-on-peptides-func

ClassificationGraph Classification
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PaperCodeAPModelNameReleaseDate
An end-to-end attention-based approach for learning on graphs✓ Link0.7479ESA + RWSE (Edge set attention, Random Walk Structural Encoding, + validation set)2024-02-16
Molecular Fingerprints Are Strong Models for Peptide Function Prediction✓ Link0.7460ECFP + LightGBM2025-01-29
An end-to-end attention-based approach for learning on graphs✓ Link0.7357±0.0036ESA + RWSE (Edge set attention, Random Walk Structural Encoding, tuned)2024-02-16
Molecular Fingerprints Are Strong Models for Peptide Function Prediction✓ Link0.7318TT + LightGBM2025-01-29
Spatio-Spectral Graph Neural Networks✓ Link0.7311±0.0066S²GCN2024-05-29
Molecular Fingerprints Are Strong Models for Peptide Function Prediction✓ Link0.7311RDKit + LightGBM2025-01-29
Unlocking the Potential of Classic GNNs for Graph-level Tasks: Simple Architectures Meet Excellence✓ Link0.7261 ± 0.0067GCN+2025-02-13
Enhancing Graph Transformers with Hierarchical Distance Structural Encoding✓ Link0.7156±0.0058GraphGPS + HDSE2023-08-22
DRew: Dynamically Rewired Message Passing with Delay✓ Link0.7150±0.0044DRew-GCN+LapPE2023-05-13
Recurrent Distance Filtering for Graph Representation Learning✓ Link0.7133±0.0011GRED+LapPE2023-12-03
Learning Long Range Dependencies on Graphs via Random Walks✓ Link0.7096 ± 0.0078NeuralWalker2024-06-05
Recurrent Distance Filtering for Graph Representation Learning✓ Link0.7085±0.0027GRED2023-12-03
An end-to-end attention-based approach for learning on graphs✓ Link0.7071±0.0015ESA (Edge set attention, no positional encodings, tuned)2024-02-16
Graph Inductive Biases in Transformers without Message Passing✓ Link0.6988±0.0082GRIT2023-05-27
CKGConv: General Graph Convolution with Continuous Kernels✓ Link0.6952CKGCN2024-04-21
A Generalization of ViT/MLP-Mixer to Graphs✓ Link0.6942±0.0075Graph ViT2022-12-27
A Generalization of ViT/MLP-Mixer to Graphs✓ Link0.6921±0.0054GraphMLPMixer2022-12-27
Next Level Message-Passing with Hierarchical Support Graphs✓ Link0.6866±0.0038GatedGCN-HSG2024-06-22
An end-to-end attention-based approach for learning on graphs✓ Link0.6863±0.0044ESA (Edge set attention, no positional encodings, not tuned)2024-02-16
Where Did the Gap Go? Reassessing the Long-Range Graph Benchmark✓ Link0.6860±0.0050GCN-tuned2023-09-01
Multiresolution Graph Transformers and Wavelet Positional Encoding for Learning Hierarchical Structures✓ Link0.6817±0.0064MGT+WavePE2023-02-17
Path Neural Networks: Expressive and Accurate Graph Neural Networks✓ Link0.6816±0.0026PathNN2023-06-09
Where Did the Gap Go? Reassessing the Long-Range Graph Benchmark✓ Link0.6765±0.0047GatedGCN-tuned2023-09-01
On the Connection Between MPNN and Graph Transformer✓ Link0.6685±0.0062GatedGCN+RWSE+virtual node2023-01-27
Topology-Informed Graph Transformer✓ Link0.6679TIGT2024-02-03
Diffusing Graph Attention0.6651±0.0010Graph Diffuser2023-03-01
Where Did the Gap Go? Reassessing the Long-Range Graph Benchmark✓ Link0.6621±0.0067GINE-tuned2023-09-01
Learning Probabilistic Symmetrization for Architecture Agnostic Equivariance✓ Link0.6575ViT-PS2023-06-05
CIN++: Enhancing Topological Message Passing✓ Link0.6569±0.0117CIN++-500k2023-06-06
Recipe for a General, Powerful, Scalable Graph Transformer✓ Link0.6535±0.0041GPS2022-05-25
Where Did the Gap Go? Reassessing the Long-Range Graph Benchmark✓ Link0.6534±0.0091GPS-tuned2023-09-01
Exphormer: Sparse Transformers for Graphs✓ Link0.6527±0.0043Exphormer2023-03-10
Molecular Topological Profile (MOLTOP) - Simple and Strong Baseline for Molecular Graph Classification✓ Link0.6459 ± 0.0005MOLTOP2024-10-17
Long Range Graph Benchmark✓ Link0.6439±0.0075SAN+RWSE2022-06-16
Graph Transformers without Positional Encodings0.6414EIGENFORMER2024-01-31
Long Range Graph Benchmark✓ Link0.6384±0.0121SAN+LapPE2022-06-16
Long Range Graph Benchmark✓ Link0.6326±0.0126Transformer+LapPE2022-06-16
Long Range Graph Benchmark✓ Link0.6069±0.0035GatedGCN+RWSE2022-06-16
How Powerful are Graph Neural Networks?✓ Link0.6043±0.0216GIN2018-10-01
PANDA: Expanded Width-Aware Message Passing Beyond Rewiring✓ Link0.6028±0.0031GCN + PANDA2024-06-06
Long Range Graph Benchmark✓ Link0.5930±0.0023GCN2022-06-16
Long Range Graph Benchmark✓ Link0.5864±0.0077GatedGCN2022-06-16
Simple and Deep Graph Convolutional Networks✓ Link0.5543±0.0078GCNII2020-07-04
Long Range Graph Benchmark✓ Link0.5498±0.0079GINE2022-06-16
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