| Paper | Code | Exact Span F1 | ModelName | ReleaseDate |
|---|---|---|---|---|
| Enhancing Clinical Concept Extraction with Contextual Embeddings | 90.25 | BERTlarge (MIMIC) | 2019-02-22 | |
| CharacterBERT: Reconciling ELMo and BERT for Word-Level Open-Vocabulary Representations From Characters | ✓ Link | 89.24 | CharacterBERT (base, medical) | 2020-10-20 |
| Cost-effective Selection of Pretraining Data: A Case Study of Pretraining BERT on Social Media | 87.4 | ClinicalBERT | 2020-10-02 | |
| Embedding Strategies for Specialized Domains: Application to Clinical Entity Recognition | ✓ Link | 86.23 | ELMo (finetuned on i2b2) + word2vec (i2b2) | 2019-07-01 |
| Machine-learned solutions for three stages of clinical information extraction: the state of the art at i2b2 2010 | 85.23 | deBruijn et al. (System 1.1) | 2011-05-12 |